IL_4V5Y_257
3D structure
- PDB id
- 4V5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.45 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5Y_257 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0649
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V5Y|1|DB|G|188
4V5Y|1|DB|G|189
4V5Y|1|DB|A|190
4V5Y|1|DB|A|191
4V5Y|1|DB|C|192
4V5Y|1|DB|U|193
4V5Y|1|DB|G|194
*
4V5Y|1|DB|C|201
4V5Y|1|DB|U|202
4V5Y|1|DB|A|203
4V5Y|1|DB|A|204
4V5Y|1|DB|G|205
4V5Y|1|DB|U|206
4V5Y|1|DB|A|207
4V5Y|1|DB|C|208
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L35
- Chain DL
- 50S ribosomal protein L15
- Chain DZ
- 50S ribosomal protein L28
Coloring options: