IL_4V5Y_260

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_260 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4787

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5Y|1|DB|C|274
4V5Y|1|DB|C|275
4V5Y|1|DB|U|276
4V5Y|1|DB|G|277
4V5Y|1|DB|A|278
4V5Y|1|DB|A|279
4V5Y|1|DB|U|280
4V5Y|1|DB|C|281
*
4V5Y|1|DB|G|359
4V5Y|1|DB|U|360
4V5Y|1|DB|G|361
4V5Y|1|DB|A|362
4V5Y|1|DB|G|363

Current chains

Chain DB

23S rRNA

Nearby chains