IL_4V63_017

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V63_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1491

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V63|1|AA|G|409
4V63|1|AA|G|410
4V63|1|AA|A|411
4V63|1|AA|A|412
4V63|1|AA|G|413
4V63|1|AA|A|414
4V63|1|AA|A|415
4V63|1|AA|G|416
*
4V63|1|AA|U|427
4V63|1|AA|G|428
4V63|1|AA|U|429
4V63|1|AA|A|430
4V63|1|AA|A|431
4V63|1|AA|A|432
4V63|1|AA|C|433

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain CK

30S ribosomal protein S11