IL_4V63_217

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V63|1|CA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V63_217 not in the Motif Atlas

Homologous match to IL_5J7L_046

Geometric discrepancy: 0.1472

The information below is about IL_5J7L_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V63|1|CA|G|1048
4V63|1|CA|U|1049
4V63|1|CA|G|1050
*
4V63|1|CA|C|1208
4V63|1|CA|C|1209

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CN

30S ribosomal protein S14

Chain CX

Peptide chain release factor 1