IL_4V63_275

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4V63|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V63_275 not in the Motif Atlas

Homologous match to IL_7RQB_033

Geometric discrepancy: 0.2766

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V63|1|DA|G|880
4V63|1|DA|G|881
*
4V63|1|DA|U|895
4V63|1|DA|A|896
4V63|1|DA|C|897

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DZ

50S ribosomal protein L25