IL_4V64_020

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1702

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V64|1|AA|U|409
4V64|1|AA|G|410
4V64|1|AA|A|411
4V64|1|AA|A|412
4V64|1|AA|G|413
4V64|1|AA|A|414
4V64|1|AA|A|415
4V64|1|AA|G|416
*
4V64|1|AA|U|427
4V64|1|AA|G|428
4V64|1|AA|U|429
4V64|1|AA|A|430
4V64|1|AA|A|431
4V64|1|AA|A|432
4V64|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4