IL_4V64_063

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V64|1|AA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_063 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.5993

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V64|1|AA|C|1407
4V64|1|AA|A|1408
4V64|1|AA|C|1409
*
4V64|1|AA|G|1491
4V64|1|AA|A|1492
4V64|1|AA|A|1493
4V64|1|AA|G|1494

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA