IL_4V64_090

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

4V64|1|BB|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_090 not in the Motif Atlas

Geometric match to IL_4WF9_022

Geometric discrepancy: 0.1102

The information below is about IL_4WF9_022

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4V64|1|BB|G|697
4V64|1|BB|C|698
*
4V64|1|BB|G|763
4V64|1|BB|A|764
4V64|1|BB|C|765

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2