IL_4V64_177

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_177 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1288

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V64|1|BB|G|2843
4V64|1|BB|G|2844
4V64|1|BB|U|2845
4V64|1|BB|G|2846
*
4V64|1|BB|C|2870
4V64|1|BB|U|2871
4V64|1|BB|A|2872
4V64|1|BB|A|2873
4V64|1|BB|C|2874

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19