IL_4V64_252

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_252 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.0877

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V64|1|DB|G|24
4V64|1|DB|U|25
4V64|1|DB|G|26
4V64|1|DB|G|27
4V64|1|DB|A|28
4V64|1|DB|U|29
4V64|1|DB|G|30
*
4V64|1|DB|C|510
4V64|1|DB|U|511
4V64|1|DB|G|512
4V64|1|DB|A|513
4V64|1|DB|A|514
4V64|1|DB|A|515
4V64|1|DB|C|516

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22