IL_4V64_269

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

4V64|1|DB|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_269 not in the Motif Atlas

Geometric match to IL_4WF9_023

Geometric discrepancy: 0.1158

The information below is about IL_4WF9_023

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V64|1|DB|U|702
4V64|1|DB|U|703
*
4V64|1|DB|G|728
4V64|1|DB|G|729
4V64|1|DB|A|730

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2