IL_4V67_020

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_020 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0873

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V67|1|AA|C|504
4V67|1|AA|G|505
4V67|1|AA|G|506
4V67|1|AA|C|507
4V67|1|AA|C|508
4V67|1|AA|A|509
4V67|1|AA|A|510
4V67|1|AA|C|511
*
4V67|1|AA|G|540
4V67|1|AA|G|541

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AE

30S ribosomal protein S5

Chain AL

30S ribosomal protein S12