3D structure

PDB id
4V67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a translation termination complex formed with release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V67_027 not in the Motif Atlas
Homologous match to IL_5J7L_031
Geometric discrepancy: 0.0717
The information below is about IL_5J7L_031
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4V67|1|AA|G|654
4V67|1|AA|A|655
*
4V67|1|AA|U|751
4V67|1|AA|G|752
4V67|1|AA|A|753
4V67|1|AA|C|754

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AO
30S ribosomal protein S15

Coloring options:


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