IL_4V67_041

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4V67|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_041 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1179

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4V67|1|AA|U|1052
4V67|1|AA|G|1053
4V67|1|AA|C|1054
4V67|1|AA|A|1055
4V67|1|AA|U|1056
*
4V67|1|AA|A|1204
4V67|1|AA|U|1205
4V67|1|AA|G|1206

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14

Chain AV

MRNA

Chain AX

Bacterial peptide chain release factor 2 (RF-2)