IL_4V67_169

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V67|1|BA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_169 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0759

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V67|1|BA|G|2737
4V67|1|BA|A|2738
4V67|1|BA|U|2739
4V67|1|BA|A|2740
4V67|1|BA|A|2741
4V67|1|BA|C|2742
*
4V67|1|BA|G|2762
4V67|1|BA|G|2763
4V67|1|BA|A|2764
4V67|1|BA|A|2765
4V67|1|BA|G|2766
4V67|1|BA|C|2767

Current chains

Chain BA

23S RRNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13