IL_4V67_194

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_194 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0989

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V67|1|CA|G|409
4V67|1|CA|G|410
4V67|1|CA|A|411
4V67|1|CA|A|412
4V67|1|CA|G|413
4V67|1|CA|A|414
4V67|1|CA|A|415
4V67|1|CA|G|416
*
4V67|1|CA|U|427
4V67|1|CA|G|428
4V67|1|CA|U|429
4V67|1|CA|A|430
4V67|1|CA|A|431
4V67|1|CA|A|432
4V67|1|CA|C|433

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CD

30S ribosomal protein S4