IL_4V67_215

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGG*CACAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_215 not in the Motif Atlas

Geometric match to IL_4WF9_085

Geometric discrepancy: 0.2787

The information below is about IL_4WF9_085

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

4V67|1|CA|G|951
4V67|1|CA|U|952
4V67|1|CA|G|953
4V67|1|CA|G|954
*
4V67|1|CA|C|1226
4V67|1|CA|A|1227
4V67|1|CA|C|1228
4V67|1|CA|A|1229
4V67|1|CA|C|1230

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19

Chain CX

Bacterial peptide chain release factor 2 (RF-2)

Chain CY

Transfer RNA; tRNA