IL_4V67_251

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_251 not in the Motif Atlas

Homologous match to IL_7RQB_009

Geometric discrepancy: 0.2117

The information below is about IL_7RQB_009

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V67|1|DA|G|273|||A
4V67|1|DA|G|273|||B
*
4V67|1|DA|U|363|||F
4V67|1|DA|A|363|||G
4V67|1|DA|C|364

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DI

50S ribosomal protein L9