IL_4V67_260

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V67|1|DA|G|801, 4V67|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_260 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0898

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V67|1|DA|G|674
4V67|1|DA|A|675
4V67|1|DA|A|676
4V67|1|DA|A|677
4V67|1|DA|C|678
*
4V67|1|DA|G|799
4V67|1|DA|A|800
4V67|1|DA|G|801
4V67|1|DA|A|802
4V67|1|DA|U|803
4V67|1|DA|A|804
4V67|1|DA|G|805
4V67|1|DA|C|806

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15