IL_4V67_291

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_291 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2128

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V67|1|DA|C|1221
4V67|1|DA|C|1222
*
4V67|1|DA|G|1227
4V67|1|DA|G|1228
4V67|1|DA|G|1229

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DV

50S ribosomal protein L21