3D structure

PDB id
4V67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a translation termination complex formed with release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UCAAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V67_314 not in the Motif Atlas
Homologous match to IL_4WF9_073
Geometric discrepancy: 0.192
The information below is about IL_4WF9_073
Detailed Annotation
UAA/GAN with extra stack
Broad Annotation
No text annotation
Motif group
IL_89021.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V67|1|DA|U|1851
4V67|1|DA|C|1852
4V67|1|DA|A|1853
4V67|1|DA|A|1854
4V67|1|DA|G|1855
*
4V67|1|DA|C|1887
4V67|1|DA|G|1888
4V67|1|DA|A|1889
4V67|1|DA|A|1890
4V67|1|DA|G|1891

Current chains

Chain DA
23S RRNA

Nearby chains

Chain CZ
Transfer RNA; tRNA
Chain DD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.6608 s