IL_4V67_334

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_334 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.1485

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

4V67|1|DA|A|2459
4V67|1|DA|U|2460
4V67|1|DA|C|2461
*
4V67|1|DA|G|2489
4V67|1|DA|G|2490
4V67|1|DA|U|2491
4V67|1|DA|U|2492
4V67|1|DA|U|2493

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CX

Bacterial peptide chain release factor 2 (RF-2)

Chain DQ

50S ribosomal protein L16