IL_4V67_335

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_335 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1813

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V67|1|DA|C|2466
4V67|1|DA|C|2467
4V67|1|DA|G|2468
4V67|1|DA|A|2469
4V67|1|DA|G|2470
*
4V67|1|DA|C|2480
4V67|1|DA|G|2481
4V67|1|DA|G|2482
4V67|1|DA|C|2483
4V67|1|DA|G|2484

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CX

Bacterial peptide chain release factor 2 (RF-2)

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25