3D structure

PDB id
4V6A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of EF-P bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
4V6A|1|BA|G|1801, 4V6A|1|BA|G|1816, 4V6A|1|BA|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6A_119 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.0664
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

4V6A|1|BA|U|1798
4V6A|1|BA|G|1799
4V6A|1|BA|C|1800
4V6A|1|BA|G|1801
4V6A|1|BA|A|1802
4V6A|1|BA|A|1803
4V6A|1|BA|C|1804
*
4V6A|1|BA|G|1813
4V6A|1|BA|G|1814
4V6A|1|BA|A|1815
4V6A|1|BA|G|1816
4V6A|1|BA|G|1817
4V6A|1|BA|U|1818
4V6A|1|BA|A|1819
4V6A|1|BA|U|1820
4V6A|1|BA|A|1821

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BD
50S ribosomal protein L2

Coloring options:


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