IL_4V6A_178

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V6A|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_178 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1637

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V6A|1|CA|G|409
4V6A|1|CA|G|410
4V6A|1|CA|A|411
4V6A|1|CA|A|412
4V6A|1|CA|G|413
4V6A|1|CA|A|414
4V6A|1|CA|A|415
4V6A|1|CA|G|416
*
4V6A|1|CA|U|427
4V6A|1|CA|G|428
4V6A|1|CA|U|429
4V6A|1|CA|A|430
4V6A|1|CA|A|431
4V6A|1|CA|A|432
4V6A|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4