IL_4V6A_230

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAG*UGGGG

Length

9 nucleotides

Bulged bases

4V6A|1|DA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_230 not in the Motif Atlas

Geometric match to IL_5BTP_004

Geometric discrepancy: 0.3719

The information below is about IL_5BTP_004

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4V6A|1|DA|C|287
4V6A|1|DA|C|288
4V6A|1|DA|A|289
4V6A|1|DA|G|290
*
4V6A|1|DA|U|350
4V6A|1|DA|G|351
4V6A|1|DA|G|352
4V6A|1|DA|G|353
4V6A|1|DA|G|354

Current chains

Chain DA

23S ribosomal RNA

Nearby chains