IL_4V6A_338

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCCCUCGGACACC*GGUGAGGGUAC

Length

25 nucleotides

Bulged bases

4V6A|1|BA|C|272|||J, 4V6A|1|BA|A|276, 4V6A|1|BA|C|277, 4V6A|1|BA|C|279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6A|1|BA|G|272|||D
4V6A|1|BA|G|272|||E
4V6A|1|BA|C|272|||F
4V6A|1|BA|C|272|||G
4V6A|1|BA|C|272|||H
4V6A|1|BA|U|272|||I
4V6A|1|BA|C|272|||J
4V6A|1|BA|G|274
4V6A|1|BA|G|275
4V6A|1|BA|A|276
4V6A|1|BA|C|277
4V6A|1|BA|A|278
4V6A|1|BA|C|279
4V6A|1|BA|C|280
*
4V6A|1|BA|G|360
4V6A|1|BA|G|361
4V6A|1|BA|U|362
4V6A|1|BA|G|363
4V6A|1|BA|A|363|||A
4V6A|1|BA|G|363|||B
4V6A|1|BA|G|363|||C
4V6A|1|BA|G|363|||D
4V6A|1|BA|U|363|||E
4V6A|1|BA|A|363|||F
4V6A|1|BA|C|364

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9