IL_4V6A_342

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

4V6A|1|CA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6A_342 not in the Motif Atlas

Geometric match to IL_6M6R_001

Geometric discrepancy: 0.1585

The information below is about IL_6M6R_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6A|1|CA|G|925
4V6A|1|CA|G|926
4V6A|1|CA|G|927
4V6A|1|CA|G|928
*
4V6A|1|CA|C|1389
4V6A|1|CA|U|1390
4V6A|1|CA|U|1391

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CX

RNA (5'-R(P*AP*AP*AP*UP*G)-3')