IL_4V6C_057

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6C_057 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.297

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V6C|1|AA|C|1259
4V6C|1|AA|G|1260
4V6C|1|AA|A|1261
4V6C|1|AA|C|1262
4V6C|1|AA|C|1263
*
4V6C|1|AA|G|1272
4V6C|1|AA|C|1273
4V6C|1|AA|A|1274
4V6C|1|AA|A|1275
4V6C|1|AA|G|1276

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14