IL_4V6C_115

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6C_115 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.1438

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4V6C|1|BA|G|1310
4V6C|1|BA|G|1311
4V6C|1|BA|U|1312
4V6C|1|BA|U|1313
*
4V6C|1|BA|A|1603
4V6C|1|BA|C|1604

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23