IL_4V6C_269

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6C_269 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1019

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4V6C|1|DA|U|703
4V6C|1|DA|G|704
4V6C|1|DA|A|705
4V6C|1|DA|A|706
4V6C|1|DA|G|707
*
4V6C|1|DA|U|724
4V6C|1|DA|G|725
4V6C|1|DA|G|726
4V6C|1|DA|A|727
4V6C|1|DA|G|728

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2