IL_4V6C_363

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CAGG*CCG

Length

7 nucleotides

Bulged bases

4V6C|1|BA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6C_363 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.2927

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6C|1|BA|C|1489
4V6C|1|BA|A|1490
4V6C|1|BA|G|1491
4V6C|1|BA|G|1492
*
4V6C|1|BA|C|1498
4V6C|1|BA|C|1499
4V6C|1|BA|G|1500

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2