IL_4V6D_171

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

4V6D|1|BA|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_171 not in the Motif Atlas

Geometric match to IL_7RQB_059

Geometric discrepancy: 0.2581

The information below is about IL_7RQB_059

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V6D|1|BA|C|2795
4V6D|1|BA|U|2796
*
4V6D|1|BA|A|2799
4V6D|1|BA|A|2800
4V6D|1|BA|G|2801

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L13