IL_4V6D_217

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGUGUAG*CGUAGAGAUC

Length

17 nucleotides

Bulged bases

4V6D|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_217 not in the Motif Atlas

Geometric match to IL_4V88_508

Geometric discrepancy: 0.2605

The information below is about IL_4V88_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99095.1

Basepair signature

cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6D|1|CA|G|682
4V6D|1|CA|G|683
4V6D|1|CA|U|684
4V6D|1|CA|G|685
4V6D|1|CA|U|686
4V6D|1|CA|A|687
4V6D|1|CA|G|688
*
4V6D|1|CA|C|699
4V6D|1|CA|G|700
4V6D|1|CA|U|701
4V6D|1|CA|A|702
4V6D|1|CA|G|703
4V6D|1|CA|A|704
4V6D|1|CA|G|705
4V6D|1|CA|A|706
4V6D|1|CA|U|707
4V6D|1|CA|C|708

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain CR

30S ribosomal protein S18

Chain DA

Large subunit ribosomal RNA; LSU rRNA