IL_4V6D_234

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_234 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.1398

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V6D|1|CA|C|1158
4V6D|1|CA|U|1159
4V6D|1|CA|G|1160
4V6D|1|CA|C|1161
*
4V6D|1|CA|G|1175
4V6D|1|CA|A|1176
4V6D|1|CA|G|1177
4V6D|1|CA|G|1178
4V6D|1|CA|A|1179
4V6D|1|CA|A|1180
4V6D|1|CA|G|1181

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CI

30S ribosomal protein S9