IL_4V6D_241

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_241 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1859

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6D|1|CA|G|1405
4V6D|1|CA|U|1406
4V6D|1|CA|C|1407
*
4V6D|1|CA|G|1494
4V6D|1|CA|U|1495
4V6D|1|CA|C|1496

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CW

messenger RNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA