IL_4V6D_255

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_255 not in the Motif Atlas

Geometric match to IL_5J7L_252

Geometric discrepancy: 0.1933

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V6D|1|DA|C|269
4V6D|1|DA|A|270
4V6D|1|DA|G|271
*
4V6D|1|DA|C|366
4V6D|1|DA|G|367
4V6D|1|DA|A|368
4V6D|1|DA|U|369
4V6D|1|DA|G|370

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DX

50S ribosomal protein L28