IL_4V6D_256

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_256 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3481

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6D|1|DA|C|274
4V6D|1|DA|C|275
4V6D|1|DA|U|276
4V6D|1|DA|G|277
4V6D|1|DA|A|278
4V6D|1|DA|A|279
4V6D|1|DA|U|280
4V6D|1|DA|C|281
*
4V6D|1|DA|G|359
4V6D|1|DA|U|360
4V6D|1|DA|G|361
4V6D|1|DA|A|362
4V6D|1|DA|G|363

Current chains

Chain DA

23S rRNA

Nearby chains