3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
4V6D|1|DA|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6D_308 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.0836
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4V6D|1|DA|C|1686
4V6D|1|DA|G|1687
4V6D|1|DA|U|1688
4V6D|1|DA|A|1689
4V6D|1|DA|A|1690
4V6D|1|DA|C|1691
*
4V6D|1|DA|G|1696
4V6D|1|DA|G|1697
4V6D|1|DA|A|1698
4V6D|1|DA|G|1699
4V6D|1|DA|A|1700
4V6D|1|DA|A|1701
4V6D|1|DA|G|1702

Current chains

Chain DA
23S rRNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain DC
50S ribosomal protein L2

Coloring options:


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