IL_4V6D_311

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

4V6D|1|DA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_311 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.3335

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V6D|1|DA|C|1727
4V6D|1|DA|C|1728
*
4V6D|1|DA|G|1731
4V6D|1|DA|C|1732
4V6D|1|DA|G|1733

Current chains

Chain DA

23S rRNA

Nearby chains