IL_4V6D_321

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4V6D|1|DA|C|2055, 4V6D|1|DA|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_321 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1106

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6D|1|DA|A|2054
4V6D|1|DA|C|2055
4V6D|1|DA|G|2056
*
4V6D|1|DA|C|2612
4V6D|1|DA|U|2613
4V6D|1|DA|A|2614
4V6D|1|DA|U|2615

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DS

50S ribosomal protein L22