IL_4V6D_368
3D structure
- PDB id
- 4V6D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.81 Å
Loop
- Sequence
- GGGAGC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6D_368 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.2287
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V6D|1|CA|G|774
4V6D|1|CA|G|775
4V6D|1|CA|G|776
4V6D|1|CA|A|777
4V6D|1|CA|G|778
4V6D|1|CA|C|779
*
4V6D|1|CA|G|803
4V6D|1|CA|U|804
4V6D|1|CA|C|805
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CK
- 30S ribosomal protein S11
- Chain CU
- 30S ribosomal protein S21
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DC
- 50S ribosomal protein L2
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