IL_4V6E_136

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4V6E|1|BA|A|1899, 4V6E|1|BA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_136 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.0911

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6E|1|BA|U|1841
4V6E|1|BA|G|1842
*
4V6E|1|BA|U|1898
4V6E|1|BA|A|1899
4V6E|1|BA|A|1900
4V6E|1|BA|A|1901

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2