IL_4V6E_264

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GACU*AGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_264 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.3335

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4V6E|1|DA|G|738
4V6E|1|DA|A|739
4V6E|1|DA|C|740
4V6E|1|DA|U|741
*
4V6E|1|DA|A|756
4V6E|1|DA|G|757
4V6E|1|DA|C|758

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34