IL_4V6E_365

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_365 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.246

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6E|1|DA|G|1719
4V6E|1|DA|U|1720
4V6E|1|DA|G|1721
4V6E|1|DA|A|1722
4V6E|1|DA|G|1723
4V6E|1|DA|G|1724
*
4V6E|1|DA|U|1736
4V6E|1|DA|G|1737
4V6E|1|DA|G|1738
4V6E|1|DA|A|1739
4V6E|1|DA|G|1740
4V6E|1|DA|C|1741

Current chains

Chain DA

23S rRNA

Nearby chains