IL_4V6F_038

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V6F|1|AA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_038 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.1907

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V6F|1|AA|G|1011
4V6F|1|AA|U|1012
4V6F|1|AA|C|1013
*
4V6F|1|AA|G|1149
4V6F|1|AA|C|1150

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain A1

50S RIBOSOMAL PROTEIN L20

Chain AM

50S RIBOSOMAL PROTEIN L13