IL_4V6F_044

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V6F|1|AA|A|1088, 4V6F|1|AA|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_044 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.2994

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

4V6F|1|AA|G|1087
4V6F|1|AA|A|1088
4V6F|1|AA|G|1089
4V6F|1|AA|U|1090
4V6F|1|AA|G|1091
*
4V6F|1|AA|C|1100
4V6F|1|AA|U|1101
4V6F|1|AA|C|1102

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains