IL_4V6F_065

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_065 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0752

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V6F|1|AA|G|1651
4V6F|1|AA|A|1652
4V6F|1|AA|G|1653
4V6F|1|AA|A|1654
4V6F|1|AA|A|1655
4V6F|1|AA|C|1656
*
4V6F|1|AA|G|2004
4V6F|1|AA|A|2005
4V6F|1|AA|C|2006

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L17

Chain AE

50S RIBOSOMAL PROTEIN L3