IL_4V6F_096

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_096 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.211

The information below is about IL_4WF9_093

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V6F|1|AA|C|2466
4V6F|1|AA|C|2467
4V6F|1|AA|G|2468
4V6F|1|AA|A|2469
4V6F|1|AA|G|2470
*
4V6F|1|AA|C|2480
4V6F|1|AA|G|2481
4V6F|1|AA|G|2482
4V6F|1|AA|C|2483
4V6F|1|AA|G|2484

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain AP

50S RIBOSOMAL PROTEIN L16

Chain AV

50S RIBOSOMAL PROTEIN L25

Chain BB

Transfer RNA; tRNA