IL_4V6F_179

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUU*AUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_179 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.1869

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

4V6F|1|C1|U|38
4V6F|1|C1|U|39
4V6F|1|C1|U|40
4V6F|1|C1|U|41
*
4V6F|1|CA|A|1531
4V6F|1|CA|U|1532
4V6F|1|CA|C|1533
4V6F|1|CA|A|1534

Current chains

Chain C1

MRNA

Chain CA

16S ribosomal RNA

Nearby chains

Chain CJ

30S ribosomal protein S7

Chain CN

30S ribosomal protein S11